Add system design and description
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@@ -1265,3 +1265,94 @@
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url = {http://dx.doi.org/10.1093/bioinformatics/btx089},
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publisher = {Oxford University Press (OUP)}
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}
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@inproceedings{inproceedings,
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author = {Dolstra, Eelco and Jonge, Merijn and Visser, Eelco},
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year = 2004,
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month = 01,
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pages = {79-92},
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title = {Nix: A Safe and Policy-Free System for Software
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Deployment.}
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}
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@Article{Caboche_2014,
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author = {Caboche, Ségolène and Audebert, Christophe and Lemoine,
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Yves and Hot, David},
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title = {Comparison of mapping algorithms used in high-throughput
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sequencing: application to Ion Torrent data},
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journal = {BMC Genomics},
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year = 2014,
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volume = 15,
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number = 1,
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pages = 264,
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issn = {1471-2164},
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doi = {10.1186/1471-2164-15-264},
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url = {http://dx.doi.org/10.1186/1471-2164-15-264},
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publisher = {Springer Science and Business Media LLC}
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}
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@Article{Weber_2020,
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author = {Weber, Cédric R and Akbar, Rahmad and Yermanos, Alexander
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and Pavlović, Milena and Snapkov, Igor and Sandve, Geir K and
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Reddy, Sai T and Greiff, Victor},
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title = {immuneSIM: tunable multi-feature simulation of B- and
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T-cell receptor repertoires for immunoinformatics
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benchmarking},
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journal = {Bioinformatics},
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year = 2020,
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editor = {Schwartz, RussellEditor},
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volume = 36,
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number = 11,
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month = {Apr},
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pages = {3594–3596},
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issn = {1460-2059},
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doi = {10.1093/bioinformatics/btaa158},
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url = {http://dx.doi.org/10.1093/bioinformatics/btaa158},
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publisher = {Oxford University Press (OUP)}
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}
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@Article{Cock_2009,
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author = {Cock, P. J. A. and Antao, T. and Chang, J. T. and Chapman,
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B. A. and Cox, C. J. and Dalke, A. and Friedberg, I. and
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Hamelryck, T. and Kauff, F. and Wilczynski, B. and et al.},
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title = {Biopython: freely available Python tools for computational
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molecular biology and bioinformatics},
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journal = {Bioinformatics},
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year = 2009,
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volume = 25,
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number = 11,
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month = {Mar},
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pages = {1422–1423},
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issn = {1460-2059},
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doi = {10.1093/bioinformatics/btp163},
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url = {http://dx.doi.org/10.1093/bioinformatics/btp163},
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publisher = {Oxford University Press (OUP)}
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}
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@misc{tensorflow2015-whitepaper,
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title = { {TensorFlow}: Large-Scale Machine Learning on
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Heterogeneous Systems},
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url = {https://www.tensorflow.org/},
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note = {Software available from tensorflow.org},
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author = { Mart\'{\i}n~Abadi and Ashish~Agarwal and Paul~Barham and
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Eugene~Brevdo and Zhifeng~Chen and Craig~Citro and
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Greg~S.~Corrado and Andy~Davis and Jeffrey~Dean and
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Matthieu~Devin and Sanjay~Ghemawat and Ian~Goodfellow and
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Andrew~Harp and Geoffrey~Irving and Michael~Isard and Yangqing
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Jia and Rafal~Jozefowicz and Lukasz~Kaiser and
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Manjunath~Kudlur and Josh~Levenberg and Dandelion~Man\'{e} and
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Rajat~Monga and Sherry~Moore and Derek~Murray and Chris~Olah
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and Mike~Schuster and Jonathon~Shlens and Benoit~Steiner and
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Ilya~Sutskever and Kunal~Talwar and Paul~Tucker and
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Vincent~Vanhoucke and Vijay~Vasudevan and Fernanda~Vi\'{e}gas
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and Oriol~Vinyals and Pete~Warden and Martin~Wattenberg and
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Martin~Wicke and Yuan~Yu and Xiaoqiang~Zheng},
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year = 2015,
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}
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@misc{Biostrings,
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title = {Biostrings: Efficient manipulation of biological strings},
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author = {H. Pagès and P. Aboyoun and R. Gentleman and S. DebRoy},
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year = 2019,
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note = {R package version 2.50.2},
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}
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