Add system design and description

This commit is contained in:
2021-07-05 02:01:23 +02:00
parent eaef4004ce
commit f9703a884e
4 changed files with 147 additions and 3 deletions

View File

@@ -1265,3 +1265,94 @@
url = {http://dx.doi.org/10.1093/bioinformatics/btx089},
publisher = {Oxford University Press (OUP)}
}
@inproceedings{inproceedings,
author = {Dolstra, Eelco and Jonge, Merijn and Visser, Eelco},
year = 2004,
month = 01,
pages = {79-92},
title = {Nix: A Safe and Policy-Free System for Software
Deployment.}
}
@Article{Caboche_2014,
author = {Caboche, Ségolène and Audebert, Christophe and Lemoine,
Yves and Hot, David},
title = {Comparison of mapping algorithms used in high-throughput
sequencing: application to Ion Torrent data},
journal = {BMC Genomics},
year = 2014,
volume = 15,
number = 1,
pages = 264,
issn = {1471-2164},
doi = {10.1186/1471-2164-15-264},
url = {http://dx.doi.org/10.1186/1471-2164-15-264},
publisher = {Springer Science and Business Media LLC}
}
@Article{Weber_2020,
author = {Weber, Cédric R and Akbar, Rahmad and Yermanos, Alexander
and Pavlović, Milena and Snapkov, Igor and Sandve, Geir K and
Reddy, Sai T and Greiff, Victor},
title = {immuneSIM: tunable multi-feature simulation of B- and
T-cell receptor repertoires for immunoinformatics
benchmarking},
journal = {Bioinformatics},
year = 2020,
editor = {Schwartz, RussellEditor},
volume = 36,
number = 11,
month = {Apr},
pages = {35943596},
issn = {1460-2059},
doi = {10.1093/bioinformatics/btaa158},
url = {http://dx.doi.org/10.1093/bioinformatics/btaa158},
publisher = {Oxford University Press (OUP)}
}
@Article{Cock_2009,
author = {Cock, P. J. A. and Antao, T. and Chang, J. T. and Chapman,
B. A. and Cox, C. J. and Dalke, A. and Friedberg, I. and
Hamelryck, T. and Kauff, F. and Wilczynski, B. and et al.},
title = {Biopython: freely available Python tools for computational
molecular biology and bioinformatics},
journal = {Bioinformatics},
year = 2009,
volume = 25,
number = 11,
month = {Mar},
pages = {14221423},
issn = {1460-2059},
doi = {10.1093/bioinformatics/btp163},
url = {http://dx.doi.org/10.1093/bioinformatics/btp163},
publisher = {Oxford University Press (OUP)}
}
@misc{tensorflow2015-whitepaper,
title = { {TensorFlow}: Large-Scale Machine Learning on
Heterogeneous Systems},
url = {https://www.tensorflow.org/},
note = {Software available from tensorflow.org},
author = { Mart\'{\i}n~Abadi and Ashish~Agarwal and Paul~Barham and
Eugene~Brevdo and Zhifeng~Chen and Craig~Citro and
Greg~S.~Corrado and Andy~Davis and Jeffrey~Dean and
Matthieu~Devin and Sanjay~Ghemawat and Ian~Goodfellow and
Andrew~Harp and Geoffrey~Irving and Michael~Isard and Yangqing
Jia and Rafal~Jozefowicz and Lukasz~Kaiser and
Manjunath~Kudlur and Josh~Levenberg and Dandelion~Man\'{e} and
Rajat~Monga and Sherry~Moore and Derek~Murray and Chris~Olah
and Mike~Schuster and Jonathon~Shlens and Benoit~Steiner and
Ilya~Sutskever and Kunal~Talwar and Paul~Tucker and
Vincent~Vanhoucke and Vijay~Vasudevan and Fernanda~Vi\'{e}gas
and Oriol~Vinyals and Pete~Warden and Martin~Wattenberg and
Martin~Wicke and Yuan~Yu and Xiaoqiang~Zheng},
year = 2015,
}
@misc{Biostrings,
title = {Biostrings: Efficient manipulation of biological strings},
author = {H. Pagès and P. Aboyoun and R. Gentleman and S. DebRoy},
year = 2019,
note = {R package version 2.50.2},
}

BIN
assets/figures/pipeline.png Normal file

Binary file not shown.

After

Width:  |  Height:  |  Size: 62 KiB