bioinformatics-course/Code/ApproximatePatternCount.py
2019-11-17 15:49:52 +01:00

15 lines
389 B
Python

def ApproximatePatternCount(Pattern, Text, d):
count = 0
for i in range(len(Text)-len(Pattern)+1):
if Text[i:i+len(Pattern)] == Pattern or HammingDistance(Text[i:i+len(Pattern)], Pattern) <= d:
count += 1
return count
def HammingDistance(p, q):
count = 0
for i in range(0, len(p)):
if p[i] != q[i]:
count += 1
return count