Tweak the modeline so it fits the screen

+keybindings.el

@@ -1,6 +1,36 @@
 ;;; +keybindings.el -*- lexical-binding: t; -*-
 ;; Custom keybindings
 ;;
+;; Select target in Makefile compilation as default
+(map! :leader :n "c c" #'makefile-executor-execute-project-target)
+;; Keybindings for R markdown polymode
+(map! :map poly-markdown+R-mode-map
+      :n "RET" #'polymode-eval-chunk
+      :desc "Evaluate code block")
+;; Map elfeed to global keybinding
+(map! :leader :n "o e" #'=rss
+      :desc "RSS reader")
+;; Map wallabag to global keybinding
+(map! :leader :n "o w" #'=wallabag
+      :desc "Read saved articles")
+;; Keybindings for org-noter
+(map! :mode pdf-view-mode
+      :n "i" #'org-noter-insert-note
+      :desc "Insert note with a subheading")
+(map! :mode pdf-view-mode
+      :n "x" #'org-noter-kill-session
+      :desc "Kill the current org-noter session")
+;; Keybindings for pdf-view
+(map! :mode pdf-view-mode
+      :n ":" #'pdf-view-goto-page
+      :desc "Move to the selected page")
+;; Keybindings for mu4e
+(map! :mode mu4e-view-mode
+      :n "S" #'mu4e-view-save-attachments
+      :desc "Save the chosen mail attachments")
 ;; Keybindings for next/previous buffer
 (map! :n "C-c j" #'previous-buffer)
 (map! :n "C-c k" #'next-buffer)
+;; Keybindings for citar
+(map! :leader :n "n B" #'citar-open-files
+      :desc "Open associated PDF with bibliography entry")

+mail.el

@@ -0,0 +1,54 @@
+;;; +mail.el -*- lexical-binding: t; -*-
+;; Mu4e configuration
+;;
+;; Set up the default email identity
+(setq user-full-name "Amin Kasrou Aouam")
+;; Use msmtp to send email
+(setq sendmail-program (executable-find "msmtp")
+      send-mail-function #'smtpmail-send-it
+      message-sendmail-f-is-evil t
+      message-sendmail-extra-arguments '("--read-envelope-from")
+      message-send-mail-function #'message-send-mail-with-sendmail)
+;; Account configuration
+(set-email-account! "gmail"
+                    '((mu4e-sent-folder       . "/gmail/sent")
+                      (mu4e-drafts-folder     . "/gmail/drafts")
+                      (mu4e-trash-folder      . "/gmail/trash")
+                      (mu4e-refile-folder     . "/gmail/archive")
+                      (smtpmail-smtp-user     . "akasroua@gmail.com")
+                      (user-mail-address      . "akasroua@gmail.com"))
+                    t)
+(set-email-account! "ugent"
+                    '((mu4e-sent-folder       . "/ugent/sent")
+                      (mu4e-drafts-folder     . "/ugent/drafts")
+                      (mu4e-trash-folder      . "/ugent/trash")
+                      (mu4e-refile-folder     . "/ugent/archive")
+                      (smtpmail-smtp-user     . "amin.kasrouaouam@ugent.be")
+                      (user-mail-address      . "amin.kasrouaouam@ugent.be"))
+                    t)
+(set-email-account! "disroot"
+                    '((mu4e-sent-folder       . "/disroot/sent")
+                      (mu4e-drafts-folder     . "/disroot/drafts")
+                      (mu4e-trash-folder      . "/disroot/trash")
+                      (mu4e-refile-folder     . "/disroot/archive")
+                      (smtpmail-smtp-user     . "akasroua@disroot.org")
+                      (user-mail-address      . "akasroua@disroot.org"))
+                    t)
+;; Configure mu4e contexts
+(setq mu4e-context-policy 'ask-if-none
+      mu4e-compose-context-policy 'ask-if-none)
+;; Run lazy check when syncing
+(setq mu4e-index-lazy-check t)
+;; Use ISO dates
+(setq mu4e-headers-date-format "%Y-%m-%d %H:%M")
+;; Disable colors for HTML emails
+(setq shr-use-colors nil)
+;; Use shortcuts to access inboxes easily
+(setq mu4e-maildir-shortcuts
+      '(("/disroot/inbox" . ?d)
+        ("/gmail/inbox" . ?g)
+        ("/ugent/inbox" . ?u)))
+;; Change mu4e bookmarks
+(setq mu4e-bookmarks '((:name "Unread messages" :query "flag:unread AND NOT flag:trashed" :key 117)
+                       (:name "Today's messages" :query "date:today..now" :key 116)
+                       (:name "Last 7 days" :query "date:7d..now" :hide-unread t :key 119)))

+org.el

@@ -8,7 +8,44 @@
 ;; Disable completion
 (set-company-backend! 'org-mode nil)
 ;; Turn off line numbers
-(add-hook! 'org-mode-hook (display-line-numbers-mode -1))
+(add-hook 'org-mode-hook (lambda () (display-line-numbers-mode -1)))
+;; Add Notes to agenda
+(setq org-agenda-files '("~/Notes"))
+;; Tailor Org super agenda
+(use-package! org-super-agenda
+  :after org-agenda
+  :init
+  (setq org-agenda-skip-scheduled-if-done t
+        org-agenda-skip-deadline-if-done t
+        org-agenda-include-deadlines t
+        org-agenda-tags-column 100
+        org-agenda-block-separator nil
+        org-agenda-compact-blocks t)
+  (setq org-super-agenda-groups '((:name "Overdue"
+                                   :deadline past)
+                                  (:name "Today"
+                                   :time-grid t
+                                   :scheduled today
+                                   :deadline today)
+                                  (:name "Important"
+                                   :priority "A")
+                                  (:name "Assignments"
+                                   :tag "labs"
+                                   :order 10)
+                                  (:name "Study"
+                                   :tag "study"
+                                   :order 10)
+                                  (:name "Thesis"
+                                   :tag "thesis"
+                                   :order 10)
+                                  (:name "Mails"
+                                   :tag "mail"
+                                   :order 10)
+                                  (:name "Periodic"
+                                   :tag "periodic"
+                                   :order 10)))
+  :config
+  (org-super-agenda-mode))
 ;; Add timestamp to DONE task
 (setq org-log-done 'time)
 ;; Print babel results to the buffer and export them
@@ -16,8 +53,10 @@
                                       (:cache . "no") (:noweb . "no") (:hlines . "no") (:tangle . "no"))
       org-babel-default-lob-header-args '((:exports . "both")))
 ;; Enter writeroom-mode in all org files
-(add-hook! 'org-mode-hook 'global-writeroom-mode)
-(add-hook! 'org-mode-hook 'visual-line-mode)
+(add-hook 'org-mode-hook 'global-writeroom-mode)
+(setq writeroom-major-modes '(org-mode)
+      +zen-text-scale 1.5)
+(add-hook 'org-mode-hook 'visual-line-mode)
 ;; Respect LANGUAGE export variable
 (add-to-list 'org-latex-packages-alist '("AUTO" "babel" t ("pdflatex")))
 ;; Don't evaluate code blocks on export
@@ -51,6 +90,10 @@
 (use-package! engrave-faces-latex
   :after ox-latex)
 (setq org-latex-src-block-backend 'engraved)
+;; Set up bibliography management
+(setq org-cite-global-bibliography '("~/Documents/Uni/Thesis/docs/bibliography.bib")
+      citar-bibliography org-cite-global-bibliography
+      citar-library-paths '("~/Documents/Uni/Thesis/bibliography"))
 ;; Add citeproc and metadata-file options to ox-pandoc
 (after! ox-pandoc
   (add-to-list 'org-pandoc-valid-options 'citeproc)
@@ -61,8 +104,46 @@
 (setq org-pomodoro-length '45
       org-pomodoro-short-break-length '15
       org-pomodoro-long-break-length '30
+      org-pomodoro-audio-player "pw-play"
       org-pomodoro-time-format "%.2m min"
       org-pomodoro-keep-killed-pomodoro-time t)
+;; Define declarative org capture remplates
+(use-package! doct
+  :commands doct)
+(setq org-capture-templates
+      (doct `(("Cookbook" :keys "c"
+               :file "~/Notes/Recipes.org"
+               :type entry
+               :template ("%(org-chef-get-recipe-from-url)"))
+              ("Reference" :keys "r"
+               :type entry
+               :file "~/Documents/Uni/Thesis/docs/Bibliography.org"
+               :function org-goto
+               :fetch-bibtex (lambda () (org-capture-ref-process-capture))
+               :org-entry (lambda () (org-capture-ref-get-org-entry))
+               :template
+               ("%{fetch-bibtex}* %?%{space}%(org-capture-ref-get-bibtex-field :title)"
+                "#+begin_src bibtex"
+                "%(org-capture-ref-get-bibtex-field :bibtex-string)"
+                "#+end_src")))))
+;; Fix org-chef scraping
+(setq org-chef-prefer-json-ld t)
+;; Get the current state of org-pomodoro
+(defun bergheim/org-clock-status ()
+  "Return the org time status - including any pomodoro activity"
+  (if (and (featurep 'org-pomodoro) (org-pomodoro-active-p))
+      (cl-case org-pomodoro-state
+        (:pomodoro
+         (format "%d min" (/ (org-pomodoro-remaining-seconds) 60)))
+        (:short-break
+         (format "Short break: %d min" (/ (org-pomodoro-remaining-seconds) 60)))
+        (:long-break
+         (format "Long break: %d min" (/ (org-pomodoro-remaining-seconds) 60)))
+        (:overtime
+         (format "Overtime! %d min" (/ (org-pomodoro-remaining-seconds) 60))))
+    (if (org-clocking-p)
+        (format "%s" (org-duration-from-minutes (org-clock-get-clocked-time)))
+      "")))
 ;; Save org-download images to an assets directory
 (after! org-download
   (setq org-download-image-dir "assets/"
@@ -75,7 +156,6 @@
   :hook (org-mode . org-modern-mode)
   :config
   (setq org-modern-star ["⁖"]))
-(add-hook! 'org-agenda-finalize-hook #'org-modern-agenda)
 ;; Configure a better split and some default for org-noter
 (after! org-noter
   (setq org-noter-always-create-frame nil
@@ -93,8 +173,37 @@
     (sp-local-pair "/" "/")
     (sp-local-pair "~" "~")
     (sp-local-pair "$" "$")))
+;; Only show a task once if it has a schedule and deadline
+(setq org-agenda-skip-deadline-prewarning-if-scheduled t)
 ;; Show raw latex when the cursor on the expression
-(add-hook! 'org-mode-hook 'org-fragtog-mode)
+(add-hook 'org-mode-hook 'org-fragtog-mode)
+;; Auto tangle on save
+(add-hook 'org-mode-hook 'org-auto-tangle-mode)
+;; Save bibtex to annotated bibliography with category selection
+(setq org-goto-interface 'outline-path-completion
+      org-goto-max-level 1)
+(use-package! org-capture-ref)
 ;; HACK Fix search folded sections
-(setq org-fold-core-style 'overlays)
-(evil-select-search-module 'evil-search-module 'evil-search)
+(after! org-fold-core
+(defun org-show-current-heading-tidily ()
+  (interactive)  ;Inteactive
+  "Show next entry, keeping other entries closed."
+  (if (save-excursion (end-of-line) (outline-invisible-p))
+      (progn (org-show-entry) (show-children))
+    (setq-local my:current_line (line-number-at-pos))
+    (outline-back-to-heading)
+    (unless (and (bolp) (org-on-heading-p))
+      (org-up-heading-safe)
+      (hide-subtree)
+      (error "Boundary reached"))
+    (org-overview)
+    (org-reveal t)
+    (org-show-entry)
+    (show-children)
+    (goto-line my:current_line)))
+(defun qw/search-buffer ()
+  (interactive)
+  (org-fold-show-all)
+  (+default/search-buffer)
+  (org-show-current-heading-tidily)))
+(map! :leader :n "s s" #'qw/search-buffer)

+ui.el

@@ -3,40 +3,54 @@
 ;; Set Font and theme
 (setq doom-font (font-spec :family "Iosevka Medium" :size 26)
       doom-theme 'doom-one)
+;; Display Magit status in fullscreen
+(after! magit
+  (setq magit-display-buffer-function #'magit-display-buffer-fullframe-status-v1))
+;; Match pdf-tools colors to the theme and fit to page by default
+(after! pdf-tools
+  (setq pdf-view-midnight-colors '("#BBC2CF" . "#282C34"))
+  (add-hook 'pdf-tools-enabled-hook 'pdf-view-midnight-minor-mode))
 ;; Customize modeline
-(setq doom-modeline-buffer-encoding nil)
+(setq doom-modeline-major-mode-icon t
+      doom-modeline-buffer-encoding nil)
+;; Hide direnv environment variables popup
+(setq direnv-always-show-summary nil)
 ;; Change splash-screen banner
 (setq fancy-splash-image "~/.doom.d/assets/emacs.svg")
+;; Remove distracting LSP UI elements
+(after! eglot
+  (setq eldoc-echo-area-use-multiline-p nil)
+  (set-popup-rule! "^\\*eglot-help" :size 0.2 :quit t :select t))
 ;; Shrink minibuffer
 (after! vertico
   (setq vertico-count 8))
 ;; Eliminate gaps between windows
 (after! frame
   (remove-hook 'doom-init-ui-hook #'window-divider-mode))
+;; Reduce size of the popup terminal
+(set-popup-rule! "*doom:vterm-popup:*" :size 0.25 :vslot -4 :select t :quit nil :ttl 0)
 ;; Show matching parenthesis on the minibuffer
 (after! smartparens (show-smartparens-global-mode t))
 ;; Modify the splash screen actions
-(setq +doom-dashboard-menu-sections
-      '(("Reload last session"
-         :icon (nerd-icons-octicon "nf-oct-history" :face 'doom-dashboard-menu-title)
-         :when (cond ((modulep! :ui workspaces)
-                      (file-exists-p (expand-file-name persp-auto-save-fname persp-save-dir)))
-                     ((require 'desktop nil t)
-                      (file-exists-p (desktop-full-file-name))))
+(assoc-delete-all "Jump to bookmark" +doom-dashboard-menu-sections)
+(assoc-delete-all "Open private configuration" +doom-dashboard-menu-sections)
+(assoc-delete-all "Open documentation" +doom-dashboard-menu-sections)
+(add-to-list '+doom-dashboard-menu-sections
+             '("Open email client"
+               :icon (all-the-icons-octicon "mail" :face 'doom-dashboard-menu-title)
+               :when (featurep! :email mu4e)
                :face (:inherit (doom-dashboard-menu-title bold))
-         :action doom/quickload-session)
-        ("Open org-agenda"
-         :icon (nerd-icons-octicon "nf-oct-calendar" :face 'doom-dashboard-menu-title)
-         :when (fboundp 'org-agenda)
-         :action org-agenda)
-        ("Recently opened files"
-         :icon (nerd-icons-faicon "nf-fa-file_text" :face 'doom-dashboard-menu-title)
-         :action recentf-open-files)))
-;; Restore previous session without confirmation
-(defadvice! restore-no-confirm-session-quickload-a ()
-  :override #'doom/quickload-session
-  (message "Restoring session...")
-  (doom-load-session)
-  (message "Session restored. Welcome back."))
+               :action =mu4e) t)
+(add-to-list '+doom-dashboard-menu-sections
+             '("RSS reader"
+               :icon (all-the-icons-octicon "rss" :face 'doom-dashboard-menu-title)
+               :when (featurep! :app rss)
+               :face (:inherit (doom-dashboard-menu-title bold))
+               :action =rss) t)
+(add-to-list '+doom-dashboard-menu-sections
+             '("Read saved articles"
+               :icon (all-the-icons-octicon "book" :face 'doom-dashboard-menu-title)
+               :face (:inherit (doom-dashboard-menu-title bold))
+               :action =wallabag) t)
 ;; Decrease size of icons in the modeline
-(setq nerd-icons-scale-factor 1.0)
+(setq all-the-icons-scale-factor 1.0)

config.el

@@ -6,56 +6,112 @@
 (load! "+ui")
 ;; Load custom keybindings
 (load! "+keybindings")
-;; Auto cleanup recentf
+;; Set projects directories
+(setq projectile-project-search-path '(("~/Projects" . 2)
+                                       ("~/Documents/Work" . 1)
+                                       ("~/Documents/Papers" . 0)
+                                       ("~/Documents/Typesetting" . 1)
+                                       ("~/Documents/Paperwork" . 1)
+                                       ("~/Documents/Typesetting" . 1)
+                                       ("~/Documents/Uni" . 3)
+                                       ("~/Repos" . 1)
+                                       "~/.dotfiles"
+                                       "~/Notes"))
+; Auto cleanup recentf
 (setq recentf-auto-cleanup 300)
-;; Save backup files to ~/.cache and autosave files to ~/.cache/emacs
+; Save backup files to ~/.cache and autosave files to ~/.cache/emacs
 (setq backup-directory-alist `(("." . "~/.cache"))
       auto-save-list-file-prefix (concat "~/.cache"))
 ;; Load org configuration
+(setq org-directory "~/Notes")
 (after! org (load! "+org"))
 ;; Disable completion and line numbers in Markdown
-(add-hook! 'markdown-mode-hook (display-line-numbers-mode -1))
+(add-hook 'markdown-mode-hook (lambda () (display-line-numbers-mode -1)))
 (after! markdown
   (set-company-backend! 'markdown-mode nil))
-;; Enable writeroom-mode for text modes
-(setq writeroom-major-modes '(org-mode markdown-mode)
-      +zen-text-scale 1.5)
-(add-hook! 'markdown-mode-hook 'global-writeroom-mode)
 ;; Reload file from disk without confirmation
 (defun revert-buffer-no-confirm ()
   (interactive)
   (revert-buffer :ignore-auto :noconfirm))
 ;; Align columns in CSV mode
-(add-hook! 'csv-mode-hook 'csv-align-mode)
-(add-hook! 'csv-mode-hook 'csv-header-line)
+(add-hook 'csv-mode-hook 'csv-align-mode)
 ;; Close compilation buffer if successful
-(defun close-compilation-buffer-if-successful (buffer string)
-  "Bury a compilation buffer if succeeded without warnings "
-  (when (and (eq major-mode 'compilation-mode)
-             (string-match "finished" string)
-             (not
-              (with-current-buffer buffer
-                (search-forward "warning" nil t))))
-    (run-with-timer 1 nil
-                    (lambda (buf)
-                      (let ((window (get-buffer-window buf)))
-                        (when (and (window-live-p window)
-                                   (eq buf (window-buffer window)))
-                          (delete-window window))))
-                    buffer)))
-(add-hook 'compilation-finish-functions #'close-compilation-buffer-if-successful)
+(setq compilation-finish-functions
+      (lambda (buf str)
+        (if (null (string-match ".*exited abnormally.*" str))
+            (progn
+              (run-at-time
+               "0.5 sec" nil 'delete-windows-on
+               (get-buffer-create "*compilation*"))
+              (message "No Compilation Errors!")))))
 ;; Map leader key for major mode to ,
-(setq evil-snipe-override-evil-repeat-keys nil)
 (setq doom-localleader-key ",")
+;; Disable company mode in Nix
+(setq-hook! 'nix-mode-hook company-idle-delay nil)
 ;; Trigger flycheck after save
 (setq flycheck-check-syntax-automatically '(save))
+;; Ignore development databases folders
+(after! lsp-mode
+  (add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]\\.mysql\\'")
+  (add-to-list 'lsp-file-watch-ignored-directories "[/\\\\]\\.pgdata\\'"))
+;; Ignore empty files
+(after! projectile
+  (add-to-list 'projectile-globally-ignored-files ".gitkeep")
+  (add-to-list 'projectile-globally-ignored-files ".envrc")
+  (add-to-list 'projectile-globally-ignored-files ".project")
+  (add-to-list 'projectile-globally-ignored-directories ".direnv")
+  (add-to-list 'projectile-globally-ignored-directories ".ipynb_checkpoints"))
+;; Associate polymode to R markdown files
+(add-to-list 'auto-mode-alist '("\\.[rR]md\\'" . poly-markdown+R-mode))
+;; Set clangd as C/C++ LSP
+(set-eglot-client! 'cc-mode '("clangd" "-j=3" "--clang-tidy"))
 ;; Use relative line numbers (Usage: number <j/k>)
 (setq display-line-numbers-type 'relative)
-;; Set indentation level to 2
-(setq tab-width 2)
-;; Move buffer while maintaining cursor centered
-(use-package! centered-cursor-mode
-  :config
-  (global-centered-cursor-mode))
-;; Restore previous session on startup
-(add-hook 'window-setup-hook #'doom/quickload-session)
+;; Use pass as auth-source
+(add-to-list 'auth-sources 'password-store)
+;; Set up wallabag
+(after! wallabag
+  (setq wallabag-host "https://wallabag.coolneng.duckdns.org"
+        wallabag-username "coolneng"
+        wallabag-password (auth-source-pass-get 'secret "api/wallabag")
+        wallabag-clientid (auth-source-pass-get "clientid" "api/wallabag")
+        wallabag-secret (auth-source-pass-get "api-secret" "api/wallabag")
+        wallabag-show-sidebar 't
+        wallabag-show-entry-switch 'switch-to-buffer
+        url-automatic-caching t)
+  (add-hook 'wallabag-after-render-hook 'wallabag-search-update-and-clear-filter))
+(add-hook! 'doom-real-buffer-functions
+  (defun +rss-buffer-p (buf)
+    (string-match-p "^\\*wallabag" (buffer-name buf))))
+(defvar +wallabag-workspace-name "*wallabag*")
+(defun =wallabag ()
+  "Activate (or switch to) `wallabag' in its workspace."
+  (interactive)
+  (if (modulep! :ui workspaces)
+      (progn
+        (+workspace-switch +wallabag-workspace-name t)
+        (doom/switch-to-scratch-buffer)
+        (wallabag)
+        (+workspace/display))
+    (setq +wallabag--wconf (current-window-configuration))
+    (delete-other-windows)
+    (switch-to-buffer (doom-fallback-buffer))
+    (wallabag)))
+;; Set up elfeed
+(after! elfeed
+  (setq elfeed-use-curl t)
+  (setq elfeed-feeds (list
+                      (list "fever+https://coolneng@rss.coolneng.duckdns.org"
+                            :api-url "https://rss.coolneng.duckdns.org/fever/"
+                            :password (auth-source-pass-get 'secret "api/miniflux"))))
+  (setq elfeed-sort-order 'ascending
+        elfeed-search-filter "@all +unread"
+        elfeed-goodies/tag-column-width 0)
+  (elfeed-protocol-enable)
+  (add-hook! 'elfeed-search-mode-hook 'elfeed-update))
+;; Set up the mail stack
+(after! mu4e (load! "+mail"))
+;; HACK Enable AOT native compilation
+(setq native-comp-deferred-compilation nil)
+(after! (doom-packages straight)
+  (setq straight--native-comp-available t))

init.el

@@ -33,7 +33,6 @@
        (ligatures
         +extra
         +iosevka)        ; ligatures and symbols to make your code pretty again
-       ;;minimap         ; show a map of the code on the side
        modeline          ; snazzy, Atom-inspired modeline, plus API
        nav-flash         ; blink the current line after jumping
        ;;neotree           ; a project drawer, like NERDTree for vim
@@ -44,7 +43,7 @@
        ;;tabs              ; an tab bar for Emacs
        ;;treemacs          ; a project drawer, like neotree but cooler
        ;;unicode           ; extended unicode support for various languages
-       ;;vc-gutter       ; vcs diff in the fringe
+       vc-gutter         ; vcs diff in the fringe
        vi-tilde-fringe   ; fringe tildes to mark beyond EOB
        window-select     ; visually switch windows
        workspaces        ; tab emulation, persistence & separate workspaces
@@ -68,13 +67,13 @@
        dired             ; making dired pretty [functional]
        electric          ; smarter, keyword-based electric-indent
        ;;ibuffer         ; interactive buffer management
-       ;;vc              ; version-control and Emacs, sitting in a tree
+       vc                ; version-control and Emacs, sitting in a tree
 
        :term
        ;;eshell            ; the elisp shell that works everywhere
        ;;shell             ; simple shell REPL for Emacs
        ;;term              ; basic terminal emulator for Emacs
-       ;;vterm             ; the best terminal emulation in Emacs
+       vterm               ; the best terminal emulation in Emacs
 
        :checkers
        syntax              ; tasing you for every semicolon you forget
@@ -83,72 +82,69 @@
 
        :tools
        ;;ansible
-       ;; biblio           ; Writes a PhD for you (citation needed)
-       ;; debugger         ; FIXME stepping through code, to help you add bugs
-       ;; direnv
+       biblio            ; Writes a PhD for you (citation needed)
+       debugger            ; FIXME stepping through code, to help you add bugs
+       direnv
        ;;docker
        ;;editorconfig      ; let someone else argue about tabs vs spaces
        ;;ein               ; tame Jupyter notebooks with emacs
-       ;;(eval +overlay)   ; run code, run (also, repls)
+       (eval +overlay)     ; run code, run (also, repls)
        ;;gist              ; interacting with github gists
        lookup              ; navigate your code and its documentation
        ;;+docsets)         ; ...or in Dash docsets locally
-       ;;lsp                 ; M-x vscode
+       (lsp +eglot)        ; M-x vscode
        ;;macos             ; MacOS-specific commands
-       ;;magit               ; a git porcelain for Emacs
-       ;;make                ; run make tasks from Emacs
+       magit               ; a git porcelain for Emacs
+       make                ; run make tasks from Emacs
        ;;pass              ; password manager for nerds
-       ;;pdf                 ; pdf enhancements
+       pdf                 ; pdf enhancements
        ;;prodigy           ; FIXME managing external services & code builders
        ;;rgb               ; creating color strings
        ;;terraform         ; infrastructure as code
        ;;tmux              ; an API for interacting with tmux
-       ;;tree-sitter         ; syntax and parsing, sitting in a tree...
-       ;;upload              ; map local to remote projects via ssh/ftp
+       upload              ; map local to remote projects via ssh/ftp
 
        :lang
        ;;agda              ; types of types of types of types...
        ;;assembly          ; assembly for fun or debugging
        ;;beancount         ; mind the GAAP
-       ;;(cc +lsp
-       ;;    +tree-sitter) ; C > C++ == 1
+       (cc +lsp)           ; C > C++ == 1
        ;;clojure           ; java with a lisp
        ;;common-lisp       ; if you've seen one lisp, you've seen them all
        ;;coq               ; proofs-as-programs
        ;;crystal           ; ruby at the speed of c
        ;;csharp            ; unity, .NET, and mono shenanigans
        data                ; config/data formats
-       ;;(dart +flutter)   ; paint ui and not much else
        ;;dhall
+       ;;(dart
+       ;;+flutter
+       ;;+lsp)             ; paint ui and not much else
        ;;elixir            ; erlang done right
        ;;elm               ; care for a cup of TEA?
        emacs-lisp          ; drown in parentheses
        ;;erlang            ; an elegant language for a more civilized age
-       ;;(ess +lsp)        ; emacs speaks statistics
+       (ess +lsp)          ; emacs speaks statistics
        ;;faust             ; dsp, but you get to keep your soul
-       ;;fortran           ; in FORTRAN, GOD is REAL (unless declared INTEGER)
        ;;fsharp            ; ML stands for Microsoft's Language
        ;;fstar             ; (dependent) types and (monadic) effects and Z3
+       ;;fortran           ; in FORTRAN, GOD is REAL (unless declared INTEGER)
        ;;gdscript          ; the language you waited for
-       ;;(go +lsp
-       ;;    +tree-sitter) ; the hipster dialect
-       ;;(graphql +lsp)    ; Give queries a REST
+       (go +lsp)           ; the hipster dialect
        ;;(haskell +lsp)  ; a language that's lazier than I am
        ;;hy                ; readability of scheme w/ speed of python
        ;;idris             ; a language you can depend on
-       ;;(json +tree-sitter) ; At least it ain't XML
-       ;;(java +lsp
-       ;;+tree-sitter) ; the poster child for carpal tunnel syndrome
+       json                ; At least it ain't XML
+       (java +lsp)         ; the poster child for carpal tunnel syndrome
        ;;(javascript +lsp) ; all(hope(abandon(ye(who(enter(here))))))
        ;;julia             ; a better, faster MATLAB
        ;;kotlin            ; a better, slicker Java(Script)
-       ;;(latex +lsp)      ; writing papers in Emacs has never been so fun
-       ;;lean              ; for folks with too much to prove
+       (latex +lsp)        ; writing papers in Emacs has never been so fun
+       ;;lean
        ;;ledger            ; an accounting system in Emacs
        ;;lua               ; one-based indices? one-based indices
        markdown            ; writing docs for people to ignore
        ;;nim               ; python + lisp at the speed of c
-       ;;(nix +tree-sitter); I hereby declare "nix geht mehr!"
+       nix                 ; I hereby declare "nix geht mehr!"
        ;;ocaml             ; an objective camel
        (org                ; organize your plain life in plain text
         +dragndrop         ; drag & drop files/images into org buffers
@@ -159,34 +155,34 @@
         +pomodoro          ; be fruitful with the tomato technique
         +present)          ; using org-mode for presentations
         ;;+pretty)
+       ;;perl              ; write code no one else can comprehend
        ;;php               ; perl's insecure younger brother
        ;;plantuml          ; diagrams for confusing people more
        ;;purescript        ; javascript, but functional
-       ;;(python +lsp      ; beautiful is better than ugly
-       ;;+pyright
-       ;;+poetry
-       ;;+tree-sitter)
+       (python +lsp        ; beautiful is better than ugly
+        +pyright
+        +poetry)
        ;;qt                ; the 'cutest' gui framework ever
        ;;racket            ; a DSL for DSLs
        ;;raku              ; the artist formerly known as perl6
-       ;;rest                ; Emacs as a REST client
+       rest                ; Emacs as a REST client
        ;;rst               ; ReST in peace
        ;;(ruby +rails)     ; 1.step {|i| p "Ruby is #{i.even? ? 'love' : 'life'}"}
        ;;rust              ; Fe2O3.unwrap().unwrap().unwrap().unwrap()
        ;;scala             ; java, but good
        ;;scheme            ; a fully conniving family of lisps
-       ;;(sh +tree-sitter) ; she sells {ba,z,fi}sh shells on the C xor
+       sh                  ; she sells {ba,z,fi}sh shells on the C xor
        ;;sml
        ;;solidity          ; do you need a blockchain? No.
        ;;swift               ; who asked for emoji variables?
        ;;terra             ; Earth and Moon in alignment for performance.
-       ;;(web +tree-sitter); the tubes
-       ;;yaml              ; JSON, but readable
+       web                 ; the tubes
+       yaml                ; JSON, but readable
        ;;zig               ; C, but simpler
 
 
        :email
-       ;;(mu4e +org +gmail)
+       (mu4e +org +gmail)
        ;;notmuch
        ;;(wanderlust +gmail)
 
@@ -195,7 +191,7 @@
        ;;emms
        ;;everywhere        ; *leave* Emacs!? You must be joking
        ;;irc               ; how neckbeards socialize
-       ;;rss                 ; emacs as an RSS reader
+       rss                 ; emacs as an RSS reader
        ;;twitter           ; twitter client https://twitter.com/vnought
 
        :config

packages.el

@@ -5,13 +5,24 @@
 ;; (package! some-package)
 ;; (package! another-package :recipe (:host github :repo "username/repo"))
 ;; (package! builtin-package :disable t)
+;; Better org agenda
+(package! org-super-agenda)
+;; Save recipes to org file
+(package! org-chef)
+;; Wallabag client
+(package! emacsql-sqlite)
+(package! wallabag :recipe (:host github :repo "chenyanming/wallabag.el" :files ("*.el" "*.alist" "*.css")))
+;; Miniflux integration for elfeed
+(package! elfeed-protocol)
 ;; Prettier LaTeX source blocks
 (package! engrave-faces)
 ;; Prettier org mode
 (package! org-modern)
+;; Tangle org files on save
+(package! org-auto-tangle)
 ;; Enable LaTeX previews automatically
 (package! org-fragtog)
-;; Light theme
-(package! os1-theme :recipe (:host github :repo "sashimacs/os1-theme"))
-;; Move buffer while maintaining cursor centered
-(package! centered-cursor-mode)
+;; Fetch and save bibtex from Firefox
+(package! asoc :recipe (:host github :repo "troyp/asoc.el"))
+(package! doct :recipe (:host github :repo "progfolio/doct"))
+(package! org-capture-ref :recipe (:host github :repo "yantar92/org-capture-ref"))

snippets/org-msg-edit-mode/email signature

@@ -1,8 +0,0 @@
-# -*- mode: snippet -*-
-# name: email signature
-# key: sign
-# --
-
-Best regards,
-
-Amin Kasrou Aouam

snippets/org-msg-edit-mode/formal greeting

@@ -1,5 +0,0 @@
-# -*- mode: snippet -*-
-# name: formal greeting
-# key: dear
-# --
-Dear Madam/Sir,

snippets/org-msg-edit-mode/french signature

@@ -1,8 +0,0 @@
-# -*- mode: snippet -*-
-# name: email signature
-# key: frsign
-# --
-
-Cordialement,
-
-Amin Kasrou Aouam