From 2acec89f844be1303713a74bec978df92a16c102 Mon Sep 17 00:00:00 2001 From: coolneng Date: Fri, 14 May 2021 20:01:56 +0200 Subject: [PATCH] Rename output file to curesim-HVR.fastq --- README.md | 2 +- src/alignment.r | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 4a93a01..881eef4 100644 --- a/README.md +++ b/README.md @@ -63,6 +63,6 @@ command invokes it: The script will generate 2 files under the data directory: -|HVR.fastq | CuReSim-HVR.fastq | +|HVR.fastq | curesim-HVR.fastq | |:----:|:-----:| |Contains the original CDR3 sequence|Contains CDR3 after the read simulation, with sequencing errors | diff --git a/src/alignment.r b/src/alignment.r index c9cdacb..e213c4f 100644 --- a/src/alignment.r +++ b/src/alignment.r @@ -145,4 +145,4 @@ get_hvr_sequences <- function(sequences, vdj_segments, cores = detectCores()) { data <- parse_data(file = "data/curesim_sequence.fastq") hvr <- get_hvr_sequences(sequences = data[[1]], vdj_segments = data[[2]]) -Biostrings::writeXStringSet(hvr, "data/CuReSim-HVR.fastq", format = "fastq") \ No newline at end of file +Biostrings::writeXStringSet(hvr, "data/curesim-HVR.fastq", format = "fastq")