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Add alignment to generation script

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coolneng
2021-05-03 21:51:48 +02:00
parent 81a57657fe
commit 36eb73b458
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generation.sh
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@@ -18,4 +18,5 @@ prefix="curesim_"
Rscript src/repertoire.r "$sequences" "$number_of_reads" && Rscript src/repertoire.r "$sequences" "$number_of_reads" &&
java -jar tools/CuReSim.jar -f "$data_directory$filename$fastq" -o "$data_directory$prefix$filename$fastq" java -jar tools/CuReSim.jar -f "$data_directory$filename$fastq" -o "$data_directory$prefix$filename$fastq"
Rscript src/alignment.r
rm "$data_directory/log.txt" rm "$data_directory/log.txt"