14 Commits

Author	SHA1	Message	Date
coolneng	ad8abcc4fc	Add usage instructions to the README	2021-05-04 01:28:49 +02:00
coolneng	0e005735bc	Create a Nix derivation for CuReSim	2021-05-04 00:57:35 +02:00
coolneng	36eb73b458	Add alignment to generation script	2021-05-03 21:51:48 +02:00
coolneng	4dec2061fc	Generate FASTQ files from the simulated repertoire	2021-04-22 13:59:45 +02:00
coolneng	35406497a3	Format generation script	2021-04-21 20:11:56 +02:00
coolneng	2a997a3e5c	Rename sequencing_runs to number_of_reads	2021-04-21 20:09:02 +02:00
coolneng	1020d610d3	Run CuReSim n times for each sequence	2021-04-21 20:00:13 +02:00
coolneng	f81e4af94e	Amplify VDJ sequences to simplify parsing	2021-03-29 22:57:36 +02:00
coolneng	576597cb04	Remove redundant sequencing runs argument	2021-03-29 20:40:01 +02:00
coolneng	bc666a37c7	Delete CuReSim log file after execution	2021-03-11 21:28:58 +01:00
coolneng	f4a001f821	Change CuReSim output file extension to FASTQ	2021-03-10 12:33:25 +01:00
coolneng	deb1066982	Set CuReSim read size to 350 bases	2021-03-02 20:07:05 +01:00
coolneng	42aadb1e28	Add sequencing runs CLI argument	2021-02-28 02:23:58 +01:00
coolneng	b51706d0c0	Create a script that executes the pipeline	2021-02-26 03:11:25 +01:00