15 Commits

Author	SHA1	Message	Date
coolneng	81a57657fe	Fix HVR end position computation	2021-05-03 21:51:32 +02:00
coolneng	5afe040592	Isolate HVR sequence and save it to a file	2021-05-03 21:15:40 +02:00
coolneng	c250c139dd	Implement cysteine location in v_alignment	2021-04-27 19:34:01 +02:00
coolneng	4dec2061fc	Generate FASTQ files from the simulated repertoire	2021-04-22 13:59:45 +02:00
coolneng	83819b296b	Save vj_sequences in a dataframe	2021-04-22 01:18:25 +02:00
coolneng	a7c1df5ce2	Refactor get_vj_sequence function	2021-04-22 01:17:35 +02:00
coolneng	81ebd4fbbe	Rename function arguments to improve readability	2021-04-21 22:12:29 +02:00
coolneng	659f0097d8	Get V and J sequences from sequence ID	2021-04-21 21:29:03 +02:00
coolneng	82fdfdc6b9	Exchange pattern and subject in the alignment	2021-04-08 18:31:50 +02:00
coolneng	dd9f7ffde4	Remove redundant HVR sequence construction	2021-04-07 19:49:44 +02:00
coolneng	e694ee3292	Select the first sequence matching the identifier	2021-04-07 18:41:14 +02:00
coolneng	38b35f7d12	Align full sequences efficiently	2021-04-07 18:31:39 +02:00
coolneng	13f453718d	Implement HVR sequence alignment	2021-03-27 09:39:59 +01:00
coolneng	3a10380d8c	Construct a dataframe containing the HVR region	2021-03-25 21:53:49 +01:00
coolneng	8f5b9ee698	Parse curesim and VDJ sequences from files	2021-03-23 20:54:31 +01:00