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Parse a FASTQ file into a Tensor

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coolneng
2021-05-06 20:34:39 +02:00
parent 62fcf0974d
commit eb072836a1
3 changed files with 7 additions and 0 deletions
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src/__init__.py Normal file
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src/constants.py Normal file
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ALLOWED_BASES = "ACGT-"

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src/model.py Normal file
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from tensorflow_io import genome
def parse_data(filepath):
HVR = genome.read_fastq(filename=filepath)
return HVR.sequences, HVR.raw_quality