21 Commits

Author	SHA1	Message	Date
coolneng	ab4a098289	Change last layers units to the number of bases	2021-07-06 18:01:06 +02:00
coolneng	fba3c5318b	Await prediction and print it in the caller	2021-07-06 17:56:43 +02:00
coolneng	403fa23106	Serve model via REST API	2021-07-06 06:21:32 +02:00
coolneng	d0220ab1f0	Add AUC metric to model	2021-07-06 03:52:36 +02:00
coolneng	1311b9b945	Apply isort to the project	2021-07-06 03:01:43 +02:00
coolneng	92c6b54966	Implement model inference of sequences	2021-07-06 02:59:37 +02:00
coolneng	eabb7f0285	Change model architecture to a MLP	2021-07-06 01:44:58 +02:00
coolneng	1a1262b0b1	Pad and mask the sequences in each batch	2021-07-05 19:55:31 +02:00
coolneng	bcc4f4b4d4	Parse data and label files from CLI arguments	2021-07-05 03:49:14 +02:00
coolneng	a3780c9761	Move hyperparameters to a class	2021-07-05 03:24:54 +02:00
coolneng	e07d0dcdbf	Change Flatten layer, loss function and add Input	2021-06-26 17:52:20 +02:00
coolneng	1e433c123f	Remove base counts from the dataset	2021-06-16 13:02:49 +02:00
coolneng	d2e5fd0fa3	Build model incrementally	2021-06-14 23:32:49 +02:00
coolneng	498d93de2a	Execute the training loop in the model module	2021-06-10 13:27:55 +02:00
coolneng	08611de8e6	Fix Tensorflow seed assignment	2021-06-07 19:26:21 +02:00
coolneng	0ce582250d	Implement the training loop and metrics evaluation	2021-06-06 00:20:03 +02:00
coolneng	220c0482f1	Move hardcorded data to a constants module	2021-06-01 19:27:10 +02:00
coolneng	5ac81c049f	Change BASES constant to a local variable	2021-06-01 18:34:29 +02:00
coolneng	59aa61112e	Create a basic CNN model	2021-05-31 20:02:44 +02:00
coolneng	6201e35e99	Document the data parsing function	2021-05-11 20:41:54 +02:00
coolneng	eb072836a1	Parse a FASTQ file into a Tensor	2021-05-06 20:34:39 +02:00