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f81e4af94e
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Amplify VDJ sequences to simplify parsing
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2021-03-29 22:57:36 +02:00 |
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576597cb04
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Remove redundant sequencing runs argument
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2021-03-29 20:40:01 +02:00 |
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13f453718d
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Implement HVR sequence alignment
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2021-03-27 09:39:59 +01:00 |
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3a10380d8c
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Construct a dataframe containing the HVR region
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2021-03-25 21:53:49 +01:00 |
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8f5b9ee698
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Parse curesim and VDJ sequences from files
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2021-03-23 20:54:31 +01:00 |
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66b39485a9
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Save vdj alignment sequences to a CSV
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2021-03-23 19:35:10 +01:00 |
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97b8914cd5
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Add literate programming notebook
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2021-03-23 18:24:12 +01:00 |
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bc666a37c7
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Delete CuReSim log file after execution
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2021-03-11 21:28:58 +01:00 |
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d5bf8f3b72
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Remove redundant casting
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2021-03-11 21:28:00 +01:00 |
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762791829a
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Save v_call and j_call to a text file
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2021-03-11 21:03:16 +01:00 |
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7b15df7614
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Simplify repertoire generation
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2021-03-10 12:34:20 +01:00 |
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f4a001f821
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Change CuReSim output file extension to FASTQ
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2021-03-10 12:33:25 +01:00 |
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d2e45bc00f
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Change output format to FASTA
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2021-03-02 20:08:14 +01:00 |
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deb1066982
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Set CuReSim read size to 350 bases
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2021-03-02 20:07:05 +01:00 |
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edc4a72425
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Update gitignore
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2021-02-28 02:24:23 +01:00 |
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42aadb1e28
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Add sequencing runs CLI argument
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2021-02-28 02:23:58 +01:00 |
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ae5014fd74
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Remove a_chain generation
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2021-02-28 02:23:28 +01:00 |
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34722f3ebf
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Add gitignore
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2021-02-26 03:11:34 +01:00 |
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b51706d0c0
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Create a script that executes the pipeline
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2021-02-26 03:11:25 +01:00 |
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53dda36c66
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Export the data to FASTQ files
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2021-02-26 02:20:11 +01:00 |
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b035c496f7
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Filter the relevant columns from immuneSIM output
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2021-02-26 02:19:40 +01:00 |
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2cece5e53e
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Set number of sequences via a CLI argument
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2021-02-25 20:02:11 +01:00 |
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010849d4c9
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Generate both alfa and beta chains
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2021-02-25 20:00:35 +01:00 |
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f63fabac4f
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Add development tools as project dependencies
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2021-02-22 21:40:17 +01:00 |
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5c37fad320
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Add data directories
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2021-02-22 00:59:32 +01:00 |
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6cb20a7b1e
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Create a repertoire simulation prototype
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2021-02-21 20:59:39 +01:00 |
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04936c47cc
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Initial commit
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2021-02-18 00:01:17 +01:00 |
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